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bioinformatics

Common Workflow Language - Bioinformatics workflows @ UNLOCK

A bioinformatic pipeline for identifying giant viruses and Preplasmiviricota viruses in metagenomic data.

Educational materials for learning about Python usage for Bioinformatics, developed by the Phyloinformatics Lab (phyloinformatics.com).

🔬 Robust ML model selector with 95% CI guarantee for medical AI | Keratoconus detection achieving 84.3% recall, 3× variance reduction | Python/XGBoost | MIT License | Published research implementation 🏥📊

PDBNucleicAcids is a Biopython based package that constructs and represent all nucleic acids in a PDB structure, with a special focus on base-pair representation.

Open 4D consciousness lab — PEC biofeedback, CRV, ganzfeld, EEG bridge, dream fold, entity ingress API

Tools for loading, fixing, comparing, and working with metabolic networks, such as SBML models.

Education materials about museomics and bioinformatics.

Colorful and fast BAM pileup.

Structural biology agent skill — PyMOL, ChimeraX, AlphaFold DB, and Rosetta automation for AI coding agents

BioInterface is a Biopython based package that extracts Protein-DNA interfaces in a PDB structures.

An implementation of Bayesian latent class model to estimate assays' performance with observed assay results, and latent true disease status.

AmpCheck investigates primer/probe - template matching and return amplicon related information.

https://dnarna.gitlab.io/ampcheck

Automated drug repurposing workflow for rare diseases – using Flask, Monarch API, DGIdb API and XGboost.

Little utilities to work with fasta files.

SeqExtract searches annotated genomes for keywords and extract corresponding fasta records

SonicParanoid is a stand-alone software tool for the identification of orthologous relationships among multiple species.

For details go to the wiki-page

DAPCy is a Python implementation of the Discriminant Analysis of Principal Components (DAPC) method for population genetics.

https://uhasselt-bioinfo.gitlab.io/dapcy/

EnergySync is a Python CLI tool for estimating caffeine effects and productivity.