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bioinformatics

Program to monitor cyanobacterias health inside photobioreactors.

Cohort-scale analysis for spatial metabolomics: patient-level statistics, differential spatial organization, and publication figures.

Common Workflow Language - Bioinformatics workflows @ UNLOCK

Educational materials for learning about Python usage for Bioinformatics, developed by the Phyloinformatics Lab (phyloinformatics.com).

Personal genomic data CLI: 23andMe/Ancestry array exports, whole-genome VCF and FASTQ, encrypted at rest

Open 4D consciousness lab — PEC biofeedback, CRV, ganzfeld, EEG bridge, dream fold, entity ingress API

Python package to run CLIPick, the CLIP-Seq peak caller, on the command line. https://doi.org/10.1093/nar/gky917

Tools for loading, fixing, comparing, and working with metabolic networks, such as SBML models.

A bioinformatic pipeline for identifying giant viruses and Preplasmiviricota viruses in metagenomic data.

🔬 Robust ML model selector with 95% CI guarantee for medical AI | Keratoconus detection achieving 84.3% recall, 3× variance reduction | Python/XGBoost | MIT License | Published research implementation 🏥📊

PDBNucleicAcids is a Biopython based package that constructs and represent all nucleic acids in a PDB structure, with a special focus on base-pair representation.

Education materials about museomics and bioinformatics.

Colorful and fast BAM pileup.

Structural biology agent skill — PyMOL, ChimeraX, AlphaFold DB, and Rosetta automation for AI coding agents

BioInterface is a Biopython based package that extracts Protein-DNA interfaces in a PDB structures.

An implementation of Bayesian latent class model to estimate assays' performance with observed assay results, and latent true disease status.

AmpCheck investigates primer/probe - template matching and return amplicon related information.

https://dnarna.gitlab.io/ampcheck

Automated drug repurposing workflow for rare diseases – using Flask, Monarch API, DGIdb API and XGboost.

Little utilities to work with fasta files.

SeqExtract searches annotated genomes for keywords and extract corresponding fasta records